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Phasianidae (1 Viewer)

"Tetraonidae"

Xiao-QI CAI, Su-Ying BAI & YU JIN, 2012. COI SEQUENCE VARIATIONS AND PHYLOGENETIC RELATIONSHIPS AMONG 13 SPECIES OF TETRAONIDAE BIRDS. Acta Zootaxonomica Sinica. Vol. 37 (2).
Abstract:
The mtDNA cytochrome c-oxidase (COI), an important gene as DNA barcodes, is a very good tool for species identification. Now it has been widely used for phylogeny studies of birds. The COI sequences of the Tetrastes bonasia and Lyrurus tetrix were sequenced in this study. The COI sequence variations and phylogenetic relationships of 13 species of Tetraonidae were analyzed, combined with homologous sequences from GenBank. The results show that variations of interspecies is higher than that of intraspecies in Tetraonidae. Sequence variations and phylogenetic relationships show that the Tetrastes bonasia belongs to Tetrastes of Tetraonidae.The variations among Lyrurus tetrix and other species of Tetrao genus is lower than that among other genus in Tetraonidae. The Lyrurus tetrix was clustered in Tetrao genus in phylogeny tree. The results suggest Lyrurus tetrix belongs to Tetrao genus.
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Hazel & Black Grouse

Xiao-QI CAI, Su-Ying BAI & YU JIN, 2012. COI SEQUENCE VARIATIONS AND PHYLOGENETIC RELATIONSHIPS AMONG 13 SPECIES OF TETRAONIDAE BIRDS. Acta Zootaxonomica Sinica. Vol. 37 (2).

... The COI sequences of the Tetrastes bonasia and Lyrurus tetrix were sequenced in this study. ... Sequence variations and phylogenetic relationships show that the Tetrastes bonasia belongs to Tetrastes of Tetraonidae. ... The results suggest Lyrurus tetrix belongs to Tetrao genus.
A quick survey of recent treatments...

  • Tetrastes bonasia: Madge & McGowan 2002 (Pheasants etc), H&M3, Zoonomen, IOC, TiF, King 1997, Dutch Birding, OSME, OBC, China Bird Report.
  • Bonasa bonasia: de Juana 1994 (HBW 2), Monroe & Sibley 1993, BirdLife, Cornell (Clements/eBird), Beaman 1994, AERC.

  • Lyrurus tetrix: Madge & McGowan 2002 (Pheasants etc), H&M3, Zoonomen, IOC, TiF, King 1997, OSME, China Bird Report.
  • Tetrao tetrix: de Juana 1994 (HBW 2), Monroe & Sibley 1993, BirdLife, Cornell (Clements/eBird), Beaman 1994, AERC, BOU, CSNA/Dutch Birding, OBC.
No consensus there!
 
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Just for comparison two older papers:
Gutiérrez, R.J., Barrowclough, G.F. & Groth, J.G. 2000: A classification of the grouse (Aves: Tetraoninae) based on mitochondrial DNA sequences. - Wildl. Biol. 6: 205-211.
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Vittorio Lucchini, Jacob Hoglund, Siegfried Klaus, Jon Swenson and Ettore Randi, 2001. Historical Biogeography and a Mitochondrial DNA Phylogeny of Grouse and Ptarmigan. Molecular Phylogenetics and Evolution, Vol. 20, No. 1, July, pp. 149–162.
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Indian Peafowl

Zhou, Sha, Irwin & Zhang (in press). Complete mitochondrial genome of the Indian peafowl (Pavo cristatus), with phylogenetic analysis in phasianidae. Mitochondrial DNA. [abstract]
 
Koklass Pheasant

Huang & Ke (in press). Phylogenetic relationship of Pucrasia (Aves: Galliformes) based on complete mitochondrial genome sequences. Mitochondrial DNA. [abstract]
 
Updated phylogenies

Yong-Yi Shen et al. 2010. A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the phasianidae. BMC Evolutionary Biology 10:132.
Provisional pdf here
Shen, Dai, Cao, Murphy, Shen & Zhang 2014. The updated phylogenies of the Phasianidae based on combined data of nuclear and mitochondrial DNA. PLoS ONE 9(4): e95786. [article] [pdf]
 
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Ocelli

Kimball, Sun, Meiklejohn, Braun, Faircloth & Glenn. Testing Darwin's hypothesis on the evolution of ornamental eyespots in peafowl and their relatives. Evolution 2014. (p238)
The most striking feature of peafowl (Pavo) is the males’ elaborate train, which exhibits ocelli (ornamental eyespots) that are under sexual selection. Two additional genera within the Phasianidae (Polyplectron and Argusianus) exhibit ocelli, but the appearance and location of these ornamental eyespots exhibits substantial variation among these genera, raising the question of whether ocelli are homologous. Within Polyplectron, ocelli are ancestral, suggesting ocelli may have evolved even earlier, prior to the divergence among genera. However, it remains unclear whether Pavo, Polyplectron, and Argusianus form a monophyletic clade in which ocelli evolved once. We estimated the phylogeny of the ocellated species using sequences from 1966 ultraconserved elements (UCEs) and three mitochondrial regions. The three ocellated genera did form a strongly supported clade, but each ocellated genus was sister to at least one genus without ocelli. Indeed, Polyplectron and Galloperdix, a genus not previously suggested to be related to any ocellated taxon, were sister genera. The close relationship between taxa with and without ocelli suggests multiple gains or losses. Independent gains, possibly reflecting a pre-existing bias for eye-like structures among females and/or the existence of a simple mutational pathway for the origin of ocelli, appears to be the most likely explanation.
[With thanks to Nick Sly.]​
 
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Chinese Grouse

Xue-Juan Li, Yuan Huang, Fu-Min Lei, 2014. Complete mitochondrial genome sequence of Bonasa sewerzowi (Galliformes: Phasianidae) and phylogenetic analysis. Zoological Systematics (formerly Acta Zootaxonomica Sinica), Vol.39 (3).

Abstract:
Bonasa sewerzowi, the smallest and most southerly distributed grouse species in the world, is a bird endemic to China. The population of B. sewerzowi had shown a declining trend, which made it to be the endangered species in the China Red Data Book and Category I of nationally protected animals. So far, however, most studies about this species were mainly focused on the morphological and ecological aspects. In order to further study the feature of B. sewerzowi, the complete mitochondrial genome (mitogenome) of B. sewerzowi was sequenced by Illumina Hiseq 2000 high-throughput sequencing. Then, we focused on comparative genomics of two Bonasa species to find their characteristics. Finally, phylogenetic position of Bonasa was made based on the mitogenome dataset. Our results revealed that: (1) the mitogenome of B. sewerzowi, consisting of 16 658 bp, displayed typical genome organization and gene order found in other previously determined Galliformes mitogenomes; (2) the structure and composition of mitogenomes were similar between B. sewerzowi and B. bonasia; (3) the monophyly of Bonasa was well supported, which had a closer phylogenetic relationship with Meleagris gallopavo.

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Syrmaticus humiae

Yongjian Bei, Weicai Chen, Binghua Sun, Jinhua Li, Jieling Lai, Shaoquan Meng. Population structure of the endangered Hume's pheasant (Syrmaticus humiae) inferred from a partial sequence of the mitochondrial DNA control region. Biochemical Systematics and Ecology. Volume 57, December 2014, Pages 69–77.

[Abstract]
 
Z.H. Huang and D.H. Ke, 2014. DNA barcoding and evolutionary relationships of the Phasianidae family in China. Genet. Mol. Res. 13 (3): 7411-7419.

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