It's because they
increased the sensitivity of the 40D (and subsequent bodies) centre AF point, David.
You'll recall that the 40D's centre point is "high precision" when used with f/2.8 lenses: this means (again because of how
phase detection works) it places more demands on the "signal" coming though to the AF system, because the 40D AF module contains more optical parts, which means the light coming through has - in effect - to "work harder".
As the linked article above says, the high precision focal point relies
especially on wide apertures (note, even if not being used at f/2.8 - presumably because of diffraction and issues around circles of confusion) and a TC makes for a much-narrowed aperture...